PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020812P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 258aa    MW: 29284.4 Da    PI: 8.0462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020812P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
   MELO3C020812P1 14 KGAWTKEEDERLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding58.31.7e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++
   MELO3C020812P1  67 RGNFTEDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.879961IPR017930Myb domain
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
SuperFamilySSF466891.76E-2913108IPR009057Homeodomain-like
PfamPF002491.6E-151461IPR001005SANT/Myb domain
CDDcd001672.86E-101661No hitNo description
PROSITE profilePS5129428.82162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2765116IPR009057Homeodomain-like
SMARTSM007172.5E-1766114IPR001005SANT/Myb domain
PfamPF002491.0E-1667111IPR001005SANT/Myb domain
CDDcd001673.13E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLISYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEDEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLNRG  120
IDPVTHRPIN ETSQEQVAST TISFTATDVK VKVEEDKSMV VVEEFQELER EDFQIEERCP  180
DLNLELRISP PYQSHPEKIV GPKNLCFACS LGLQNSKDCS CKIGCSIGTS TGNNNKVGYD  240
FLGIKNGILD YRSLEMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819130.0LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457683.10.0PREDICTED: myb-related protein 308-like
SwissprotP813931e-117MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A0A0LLM61e-162A0A0A0LLM6_CUCSA; Uncharacterized protein
STRINGPOPTR_0004s18020.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-116myb domain protein 4